3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00857

Details:

PFam ID : PF00857

PFam Domain Description : Isochorismatase family

Number of Sequence in 50% Dataset : 641

Number of Sequence in Full Dataset : 3977

Average sequence length: 170.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00857	E5L781_EDWTA_1_54	87.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00857	Q4QID8_LEIMA_159_228	99.9

Sequence based PCA Plot of the family - PF00857 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=11
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=47 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay