3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00852

Details:

PFam ID : PF00852

PFam Domain Description : Glycosyltransferase family 10 (fucosyltransferase)

Number of Sequence in 50% Dataset : 243

Number of Sequence in Full Dataset : 683

Average sequence length: 278.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00852	B0WH22_CULQU_246_303	94.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00852	B4HVT0_DROSE_90_320	100

Sequence based PCA Plot of the family - PF00852 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=164 Length=8
Motif2 Start=179 Length=8
Motif3 Start=196 Length=8
Motif4 Start=13 Length=14

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay