3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00850

Details:

PFam ID : PF00850

PFam Domain Description : Histone deacetylase domain

Number of Sequence in 50% Dataset : 329

Number of Sequence in Full Dataset : 2074

Average sequence length: 286.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00850	A5BFM2_VITVI_386_475	89.9

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00850	D3S2M4_FERPA_37_138	100

Sequence based PCA Plot of the family - PF00850 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=10 Length=27
Motif2 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay