3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00847

Details:

PFam ID : PF00847

PFam Domain Description : AP2 domain

Number of Sequence in 50% Dataset : 137

Number of Sequence in Full Dataset : 1427

Average sequence length: 51.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00847	C1DZM2_MICSR_165_219	77.9

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00847	D6DUH9_ENTCL_112_161	85

Sequence based PCA Plot of the family - PF00847 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=33 Length=17
Motif2 Start=13 Length=8
Motif3 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay