3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00844

Details:

PFam ID : PF00844

PFam Domain Description : Geminivirus coat protein/nuclear export factor BR1 family

Number of Sequence in 50% Dataset : 26

Number of Sequence in Full Dataset : 438

Average sequence length: 200.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00844	A8ULA9_9GEMI_1_150	52

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00844	CAPSD_TPCTV_3_242	100

Sequence based PCA Plot of the family - PF00844 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=10 Length=18
Motif2 Start=1 Length=8
Motif3 Start=93 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay