3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00843

Details:

PFam ID : PF00843

PFam Domain Description : Arenavirus nucleocapsid protein

Number of Sequence in 50% Dataset : 8

Number of Sequence in Full Dataset : 47

Average sequence length: 371.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00843	Q8V5C0_PIRVV_1_203	71.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00843	C3VVN1_9VIRU_4_533	100

Sequence based PCA Plot of the family - PF00843 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=49 Length=8
Motif4 Start=24 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay