3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00842

Details:

PFam ID : PF00842

PFam Domain Description : Alanine racemase, C-terminal domain

Number of Sequence in 50% Dataset : 89

Number of Sequence in Full Dataset : 1400

Average sequence length: 126.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00842	B0TI84_HELMI_241_384	95.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00842	B0TI84_HELMI_241_384	100

Sequence based PCA Plot of the family - PF00842 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=111 Length=8
Motif2 Start=16 Length=11
Motif3 Start=87 Length=17
Motif4 Start=34 Length=14

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay