3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00840

Details:

PFam ID : PF00840

PFam Domain Description : Glycosyl hydrolase family 7

Number of Sequence in 50% Dataset : 52

Number of Sequence in Full Dataset : 426

Average sequence length: 256.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00840	E9HQZ3_DAPPU_1_59	58.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00840	B2M126_PENOX_27_80	100

Sequence based PCA Plot of the family - PF00840 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=40 Length=11
Motif4 Start=69 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay