3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00839

Details:

PFam ID : PF00839

PFam Domain Description : Cysteine rich repeat

Number of Sequence in 50% Dataset : 127

Number of Sequence in Full Dataset : 507

Average sequence length: 57.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00839	D8U9P0_VOLCA_482_548	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00839	A7RHA9_NEMVE_42_104	100

Sequence based PCA Plot of the family - PF00839 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=1 Length=18
Motif2 Start=22 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay