3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00838

Details:

PFam ID : PF00838

PFam Domain Description : Translationally controlled tumour protein

Number of Sequence in 50% Dataset : 49

Number of Sequence in Full Dataset : 252

Average sequence length: 148.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00838	A2F397_TRIVA_1_145	50

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00838	TCTP2_DICDI_1_191	100

Sequence based PCA Plot of the family - PF00838 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=70 Length=8
Motif3 Start=11 Length=8
Motif4 Start=137 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay