3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00837

Details:

PFam ID : PF00837

PFam Domain Description : Iodothyronine deiodinase

Number of Sequence in 50% Dataset : 37

Number of Sequence in Full Dataset : 112

Average sequence length: 163.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00837	B5G334_TAEGU_4_67	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00837	C3YLV1_BRAFL_4_125	98.1

Sequence based PCA Plot of the family - PF00837 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=29 Length=8
Motif2 Start=135 Length=8
Motif3 Start=169 Length=8
Motif4 Start=94 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay