3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00820

Details:

PFam ID : PF00820

PFam Domain Description : Borrelia lipoprotein

Number of Sequence in 50% Dataset : 7

Number of Sequence in Full Dataset : 70

Average sequence length: 157.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00820	Q83YX2_BORBU_1_32	16.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00820	E5FR25_BORAF_1_63	100

Sequence based PCA Plot of the family - PF00820 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay