3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00818

Details:

PFam ID : PF00818

PFam Domain Description : Ice nucleation protein repeat

Number of Sequence in 50% Dataset : 56

Number of Sequence in Full Dataset : 70

Average sequence length: 15.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00818	B2D1X8_9PSED_501_516	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00818	B0FXJ3_PSESY_673_688	100

Sequence based PCA Plot of the family - PF00818 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay