3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00817

Details:

PFam ID : PF00817

PFam Domain Description : impB/mucB/samB family

Number of Sequence in 50% Dataset : 267

Number of Sequence in Full Dataset : 2664

Average sequence length: 151.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00817	D8TUZ7_VOLCA_1_301	65.0

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00817	Q1NNX6_9DELT_24_139	99.3

Sequence based PCA Plot of the family - PF00817 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=127 Length=11
Motif2 Start=139 Length=8
Motif3 Start=56 Length=8
Motif4 Start=39 Length=14

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay