3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00816

Details:

PFam ID : PF00816

PFam Domain Description : H-NS histone family

Number of Sequence in 50% Dataset : 130

Number of Sequence in Full Dataset : 687

Average sequence length: 94.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00816	B2AJZ3_CUPTR_1_57	91.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00816	Q8DF50_VIBVU_8_144	100

Sequence based PCA Plot of the family - PF00816 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=118 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay