3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00815

Details:

PFam ID : PF00815

PFam Domain Description : Histidinol dehydrogenase

Number of Sequence in 50% Dataset : 78

Number of Sequence in Full Dataset : 1276

Average sequence length: 396.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00815	D1KBL0_9GAMM_5_108	66.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00815	HISX_BUCSC_18_201	100

Sequence based PCA Plot of the family - PF00815 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=1 Length=8
Motif2 Start=51 Length=8
Motif3 Start=26 Length=19

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay