3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00814

Details:

PFam ID : PF00814

PFam Domain Description : Glycoprotease family

Number of Sequence in 50% Dataset : 421

Number of Sequence in Full Dataset : 3074

Average sequence length: 219.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00814	B2WBX5_PYRTR_89_158	86.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00814	Q2HS64_MEDTR_1_59	99.9

Sequence based PCA Plot of the family - PF00814 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=81 Length=8
Motif2 Start=2 Length=8
Motif3 Start=59 Length=8
Motif4 Start=35 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay