3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00813

Details:

PFam ID : PF00813

PFam Domain Description : Flagellar protein FliS

Number of Sequence in 50% Dataset : 29

Number of Sequence in Full Dataset : 657

Average sequence length: 189.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00813	C0GJG8_9FIRM_1_123	75

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00813	Q9PJH8_CHLMU_99_307	100

Sequence based PCA Plot of the family - PF00813 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=1 Length=11
Motif2 Start=16 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay