3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00812

Details:

PFam ID : PF00812

PFam Domain Description : Ephrin

Number of Sequence in 50% Dataset : 31

Number of Sequence in Full Dataset : 108

Average sequence length: 130

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00812	F1Q2I0_CANFA_1_68	86.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00812	EFN4_CAEBR_19_175	100

Sequence based PCA Plot of the family - PF00812 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=16 Length=20
Motif2 Start=1 Length=8
Motif3 Start=82 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay