3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00811

Details:

PFam ID : PF00811

PFam Domain Description : Ependymin

Number of Sequence in 50% Dataset : 46

Number of Sequence in Full Dataset : 88

Average sequence length: 127.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00811	C3Z457_BRAFL_86_213	93.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00811	LVN1_LYTVA_20_161	100

Sequence based PCA Plot of the family - PF00811 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=45 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay