3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00810

Details:

PFam ID : PF00810

PFam Domain Description : ER lumen protein retaining receptor

Number of Sequence in 50% Dataset : 40

Number of Sequence in Full Dataset : 281

Average sequence length: 138.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00810	C5KEI9_9ALVE_9_159	5.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00810	Q5CP49_CRYHO_93_291	100

Sequence based PCA Plot of the family - PF00810 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=1 Length=33
Motif2 Start=140 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay