3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00808

Details:

PFam ID : PF00808

PFam Domain Description : Histone-like transcription factor (CBF/NF-Y) and archaeal histone

Number of Sequence in 50% Dataset : 91

Number of Sequence in Full Dataset : 804

Average sequence length: 64.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00808	B5XC29_SALSA_3_65	67.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00808	C7P5J1_METFA_1_71	99.8

Sequence based PCA Plot of the family - PF00808 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=61 Length=8
Motif2 Start=4 Length=27

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay