3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00803

Details:

PFam ID : PF00803

PFam Domain Description : 3A/RNA2 movement protein family

Number of Sequence in 50% Dataset : 21

Number of Sequence in Full Dataset : 65

Average sequence length: 219.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00803	Q1AF90_9VIRU_9_244	20

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00803	Q50L54_9BROM_18_251	100

Sequence based PCA Plot of the family - PF00803 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=1 Length=39

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay