3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00799 Details: PFam ID : PF00799 PFam Domain Description : Geminivirus Rep catalytic domain Number of Sequence in 50% Dataset : 31 Number of Sequence in Full Dataset : 360 Average sequence length: 105.9 Pairwise Identity of Sequence in 50% Dataset : 31.3 FASSM Based Coverage Results:Pfam IDBest ProfileCoverage of Best ProfilePF00799B0DV72_LACBS_94_16870 HMMER Based Coverage Results:Pfam IDBest ProfileCoverage of Best ProfilePF00799E9N6U7_9GEMI_18_13699.7 Sequence based PCA Plot of the family - PF00799 : BRP of Green color is by FASSM and of Red color is by HMMER PSIMOT-Motifs Extracted using PSIMOT:There are 4 motifsMotif1 Start=16 Length=8Motif2 Start=104 Length=8Motif3 Start=7 Length=8Motif4 Start=84 Length=8 Download PSSM/HMM Models/Alignment:Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay
PFam ID : PF00799
PFam Domain Description : Geminivirus Rep catalytic domain
Number of Sequence in 50% Dataset : 31
Number of Sequence in Full Dataset : 360
Average sequence length: 105.9
Pairwise Identity of Sequence in 50% Dataset : 31.3
BRP of Green color is by FASSM and of Red color is by HMMER