Home Browse Search Download Help Group

3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00799
Details:

PFam ID : PF00799

PFam Domain Description : Geminivirus Rep catalytic domain

Number of Sequence in 50% Dataset : 31

Number of Sequence in Full Dataset : 360

Average sequence length: 105.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:
Pfam IDBest ProfileCoverage of Best Profile
PF00799B0DV72_LACBS_94_16870
HMMER Based Coverage Results:
Pfam IDBest ProfileCoverage of Best Profile
PF00799E9N6U7_9GEMI_18_13699.7
Sequence based PCA Plot of the family - PF00799 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=16 Length=8
Motif2 Start=104 Length=8
Motif3 Start=7 Length=8
Motif4 Start=84 Length=8
Download PSSM/HMM Models/Alignment:
Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay