3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00798

Details:

PFam ID : PF00798

PFam Domain Description : Arenavirus glycoprotein

Number of Sequence in 50% Dataset : 13

Number of Sequence in Full Dataset : 55

Average sequence length: 383.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00798	Q9WA85_LYCVW_1_108	33.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00798	Q9DK06_ALLVP_1_498	100

Sequence based PCA Plot of the family - PF00798 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=322 Length=11
Motif2 Start=189 Length=8
Motif3 Start=345 Length=17
Motif4 Start=424 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay