3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00795

Details:

PFam ID : PF00795

PFam Domain Description : Carbon-nitrogen hydrolase

Number of Sequence in 50% Dataset : 991

Number of Sequence in Full Dataset : 5780

Average sequence length: 180.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00795	C4ZGY5_EUBR3_746_887	97.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00795	Q5PB57_ANAMM_4_122	99.7

Sequence based PCA Plot of the family - PF00795 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=39 Length=8
Motif3 Start=1 Length=8
Motif4 Start=97 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay