3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00793

Details:

PFam ID : PF00793

PFam Domain Description : DAHP synthetase I family

Number of Sequence in 50% Dataset : 54

Number of Sequence in Full Dataset : 2158

Average sequence length: 278.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00793	B3SFR1_TRIAD_1_86	5.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00793	D7JGW3_9BACT_2_243	99.7

Sequence based PCA Plot of the family - PF00793 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=113 Length=20
Motif2 Start=221 Length=29
Motif3 Start=29 Length=11
Motif4 Start=202 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay