3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00790

Details:

PFam ID : PF00790

PFam Domain Description : VHS domain

Number of Sequence in 50% Dataset : 102

Number of Sequence in Full Dataset : 476

Average sequence length: 129.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00790	A2DIT8_TRIVA_339_411	54.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00790	C0SJL0_PARBP_12_79	100

Sequence based PCA Plot of the family - PF00790 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=2 Length=39

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay