3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00789

Details:

PFam ID : PF00789

PFam Domain Description : UBX domain

Number of Sequence in 50% Dataset : 258

Number of Sequence in Full Dataset : 901

Average sequence length: 82.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00789	C5KAS1_9ALVE_307_384	85.9

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00789	Q7ZA19_KLULC_450_600	100

Sequence based PCA Plot of the family - PF00789 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=9 Length=17
Motif2 Start=29 Length=8
Motif3 Start=48 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay