3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00784

Details:

PFam ID : PF00784

PFam Domain Description : MyTH4 domain

Number of Sequence in 50% Dataset : 87

Number of Sequence in Full Dataset : 348

Average sequence length: 106.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00784	Q4H1E4_TETTH_1112_1231	93.0

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00784	A9VBE1_MONBE_819_950	100

Sequence based PCA Plot of the family - PF00784 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=19 Length=17
Motif2 Start=45 Length=8
Motif3 Start=123 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay