3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00782

Details:

PFam ID : PF00782

PFam Domain Description : Dual specificity phosphatase, catalytic domain

Number of Sequence in 50% Dataset : 672

Number of Sequence in Full Dataset : 2603

Average sequence length: 123.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00782	D7M3U4_ARALL_12_108	96.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00782	Q0U8Q0_PHANO_227_410	100

Sequence based PCA Plot of the family - PF00782 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=15 Length=11
Motif3 Start=129 Length=8
Motif4 Start=170 Length=14

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay