3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00780

Details:

PFam ID : PF00780

PFam Domain Description : CNH domain

Number of Sequence in 50% Dataset : 216

Number of Sequence in Full Dataset : 508

Average sequence length: 248.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00780	D6RFR0_MOUSE_1142_1311	53.9

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00780	E9C165_9EUKA_1091_1294	97.4

Sequence based PCA Plot of the family - PF00780 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=19 Length=18
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay