3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00778

Details:

PFam ID : PF00778

PFam Domain Description : DIX domain

Number of Sequence in 50% Dataset : 25

Number of Sequence in Full Dataset : 115

Average sequence length: 76

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00778	E5ST09_TRISP_737_798	58.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00778	E5ST09_TRISP_737_798	100

Sequence based PCA Plot of the family - PF00778 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=4 Length=8
Motif2 Start=17 Length=18
Motif3 Start=46 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay