3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00777

Details:

PFam ID : PF00777

PFam Domain Description : Glycosyltransferase family 29 (sialyltransferase)

Number of Sequence in 50% Dataset : 201

Number of Sequence in Full Dataset : 614

Average sequence length: 211.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00777	C0P7J0_MAIZE_1_63	79.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00777	C3ZG89_BRAFL_645_765	100

Sequence based PCA Plot of the family - PF00777 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=86 Length=11
Motif4 Start=103 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay