3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00775

Details:

PFam ID : PF00775

PFam Domain Description : Dioxygenase

Number of Sequence in 50% Dataset : 73

Number of Sequence in Full Dataset : 1181

Average sequence length: 155.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00775	Q93LH7_9RHOB_1_52	81.9

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00775	Q1AZJ5_RUBXD_82_272	100

Sequence based PCA Plot of the family - PF00775 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=21 Length=11
Motif2 Start=112 Length=8
Motif3 Start=98 Length=8
Motif4 Start=47 Length=14

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay