3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00771

Details:

PFam ID : PF00771

PFam Domain Description : Ferric iron reductase FhuF-like transporter

Number of Sequence in 50% Dataset : 87

Number of Sequence in Full Dataset : 746

Average sequence length: 593.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00771	C7BJL3_PHOAA_412_618	69.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00771	E8QXB3_ISOPI_41_778	100

Sequence based PCA Plot of the family - PF00771 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=120 Length=8
Motif3 Start=14 Length=11
Motif4 Start=156 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay