3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00768

Details:

PFam ID : PF00768

PFam Domain Description : D-alanyl-D-alanine carboxypeptidase

Number of Sequence in 50% Dataset : 256

Number of Sequence in Full Dataset : 2053

Average sequence length: 232.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00768	E5WMS9_9BACI_18_99	83.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00768	E5WMS9_9BACI_18_99	100

Sequence based PCA Plot of the family - PF00768 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=10 Length=11
Motif2 Start=1 Length=8
Motif3 Start=24 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay