3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00766

Details:

PFam ID : PF00766

PFam Domain Description : Electron transfer flavoprotein FAD-binding domain

Number of Sequence in 50% Dataset : 21

Number of Sequence in Full Dataset : 957

Average sequence length: 85.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00766	E1AWN6_9GAMM_1_86	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00766	E6N8B0_9ARCH_216_322	100

Sequence based PCA Plot of the family - PF00766 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=20 Length=18
Motif2 Start=39 Length=8
Motif3 Start=3 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay