3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00765

Details:

PFam ID : PF00765

PFam Domain Description : Autoinducer synthetase

Number of Sequence in 50% Dataset : 88

Number of Sequence in Full Dataset : 315

Average sequence length: 173.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00765	E1AWN6_9GAMM_1_86	96.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00765	E2G6R4_9GAMM_14_203	100

Sequence based PCA Plot of the family - PF00765 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=34 Length=8
Motif3 Start=58 Length=8
Motif4 Start=17 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay