3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00764

Details:

PFam ID : PF00764

PFam Domain Description : Arginosuccinate synthase

Number of Sequence in 50% Dataset : 61

Number of Sequence in Full Dataset : 976

Average sequence length: 371.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00764	E9EIW5_METAQ_88_164	46.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00764	C9SUN4_VERA1_1_214	100

Sequence based PCA Plot of the family - PF00764 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=158 Length=11
Motif2 Start=201 Length=8
Motif3 Start=133 Length=8
Motif4 Start=1 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay