3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00759

Details:

PFam ID : PF00759

PFam Domain Description : Glycosyl hydrolase family 9

Number of Sequence in 50% Dataset : 195

Number of Sequence in Full Dataset : 869

Average sequence length: 379.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00759	B8AYY3_ORYSI_474_561	93.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00759	Q1NHT4_9SPHN_551_674	99.8

Sequence based PCA Plot of the family - PF00759 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=117 Length=8
Motif2 Start=62 Length=8
Motif3 Start=509 Length=11
Motif4 Start=12 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay