3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00755

Details:

PFam ID : PF00755

PFam Domain Description : Choline/Carnitine o-acyltransferase

Number of Sequence in 50% Dataset : 269

Number of Sequence in Full Dataset : 693

Average sequence length: 413.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00755	B7QMG7_IXOSC_1_57	87.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00755	E2L7N0_MONPE_1_115	100

Sequence based PCA Plot of the family - PF00755 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=131 Length=8
Motif2 Start=413 Length=8
Motif3 Start=20 Length=18

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay