3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00754

Details:

PFam ID : PF00754

PFam Domain Description : F5/8 type C domain

Number of Sequence in 50% Dataset : 1478

Number of Sequence in Full Dataset : 3990

Average sequence length: 124.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00754	D6X7A0_STRPR_715_762	97.9

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00754	D7K7C3_9BACE_733_894	99.7

Sequence based PCA Plot of the family - PF00754 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=21 Length=21

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay