3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00753

Details:

PFam ID : PF00753

PFam Domain Description : Metallo-beta-lactamase superfamily

Number of Sequence in 50% Dataset : 2575

Number of Sequence in Full Dataset : 12845

Average sequence length: 190.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00753	E3QXI3_COLGM_44_337	98.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00753	B1XVW5_POLNS_4_88	99.8

Sequence based PCA Plot of the family - PF00753 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=2 Length=8
Motif2 Start=15 Length=8
Motif3 Start=51 Length=8
Motif4 Start=225 Length=14

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay