3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00752

Details:

PFam ID : PF00752

PFam Domain Description : XPG N-terminal domain

Number of Sequence in 50% Dataset : 102

Number of Sequence in Full Dataset : 696

Average sequence length: 97.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00752	E9AWE7_LEIME_1_53	89.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00752	Q4YSN7_PLABA_1_125	100

Sequence based PCA Plot of the family - PF00752 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=98 Length=8
Motif4 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay