3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00749

Details:

PFam ID : PF00749

PFam Domain Description : tRNA synthetases class I (E and Q), catalytic domain

Number of Sequence in 50% Dataset : 107

Number of Sequence in Full Dataset : 2943

Average sequence length: 277.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00749	D1B099_SULD5_1_128	51.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00749	Q4RJW3_TETNG_205_247	100

Sequence based PCA Plot of the family - PF00749 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=34 Length=19
Motif2 Start=109 Length=11
Motif3 Start=15 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay