3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00746

Details:

PFam ID : PF00746

PFam Domain Description : Gram positive anchor

Number of Sequence in 50% Dataset : 223

Number of Sequence in Full Dataset : 1337

Average sequence length: 38.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00746	C1CCC8_STRZJ_1964_2002	95.0

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00746	C8ZX86_ENTGA_1357_1395	99.4

Sequence based PCA Plot of the family - PF00746 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=28 Length=8
Motif2 Start=19 Length=8
Motif3 Start=10 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay