3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00745

Details:

PFam ID : PF00745

PFam Domain Description : Glutamyl-tRNAGlu reductase, dimerisation domain

Number of Sequence in 50% Dataset : 186

Number of Sequence in Full Dataset : 778

Average sequence length: 99.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00745	E1Z3K3_9CHLO_433_496	63.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00745	HEM1_CLOP1_287_400	100

Sequence based PCA Plot of the family - PF00745 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=40 Length=8
Motif3 Start=17 Length=8
Motif4 Start=82 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay