3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00743

Details:

PFam ID : PF00743

PFam Domain Description : Mitochondrial protein from FMP27

Number of Sequence in 50% Dataset : 412

Number of Sequence in Full Dataset : 1461

Average sequence length: 253.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00743	B2W7E8_PYRTR_4_280	88.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00743	Q4T138_TETNG_1_44	100

Sequence based PCA Plot of the family - PF00743 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=69 Length=8
Motif2 Start=1 Length=21
Motif3 Start=98 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay