3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00742

Details:

PFam ID : PF00742

PFam Domain Description : Homoserine dehydrogenase

Number of Sequence in 50% Dataset : 100

Number of Sequence in Full Dataset : 1302

Average sequence length: 180.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00742	B6W951_9FIRM_1_48	70.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00742	B8CAZ2_THAPS_290_496	100

Sequence based PCA Plot of the family - PF00742 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=1 Length=8
Motif2 Start=23 Length=8
Motif3 Start=37 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay